Tamim Iqbal was deemed not out after the third umpire decided Kyle Jamieson was not in full control when the catch was taken.
With Bangladesh not in contention in the World Test Championship, Shakib said it was more meaningful to compete in the IPL.
Bangladesh were bowled out by New Zealand on 131 in only 41.5 overs, and the hosts chased down the target in the 22nd over.
Shakib Al Hasan's request seeking a longer stint in the IPL has left the Bangladesh Cricket Board disappointed and it has decided to add new clauses in the players' central contracts to avoid a similar situation in future.
The board has decided to give its players No Objection Certificates (NOC) for the cash-rich tournament.
Offspinner Rahkeem Cornwall played a key role, ending the match with 9-179 as West Indies clinched the series despite stubborn resistance from Mehidy Hasan.
West Indies reached 41-3 in its second innings at stumps on day three for a lead of 154 runs.
Da Silva added 88 for the sixth wicket with Nkrumah Bonner and then built the century partnership with Joseph to take hosts to a respectable 409 in the first innings.
Kyle Mayers became the first batsman to score a fourth-innings double century on debut as West Indies chased down 395 runs for a three-wicket win in the first test.
Mayers, who scored 40 runs in the first innings, ended with 250 runs in the match, the second-highest for a West Indies batsman on debut.
Mominul’s 115 — reaching the 3,000 runs milestone in the process — helped Bangladesh set a fearsome 395 runs target for West Indies.
The West Indies was 75-2 in reply, captain Kraigg Brathwaite on 49 at stumps and newcomer Nkrumah Bonner on 17 in an unbroken 51-run partnership.
Under the revised schedule, Bangladesh will play three ODIs and an equal number of T20 Internationals between March 20 and April 1.
Left-arm spinner Jomel Warrican picked up three wickets, conceding 58 runs, to pose a strong challenge to the hosts.
Shakib plays his first test since September 2019 following a two-year ban — one year suspended — by the International Cricket Council in October 2019 for failing to report approaches from a bookmaker.
Skipper Tamim Iqbal, Shakib Al Hasan, Mushfiqur Rahim and Mahmudullah all hit half-centuries to help Bangladesh post 297-6
Skipper Tamim Iqbal hit 50 to help the side chase the target in 33.2 overs after the West Indies was bowled out for 148 in 43.4 overs.
All-rounder Shakib was back after being given a two-year ban by the International Cricket Council in October 2019, with one year suspended, for failing to report approaches from a bookmaker.
Since the ban this will be the first international assignment for Shakib, who was earlier named in the 24-man preliminary squad for the series.
No primary contact to the leg-spinner has been established as the West Indies touring squad has remained in individual isolation since their arrival.
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