Marvin Friedrich scored the winner with a header to a corner in the 78th minute for the home side to move just a point behind Dortmund after 13 games played.
Dortmund dropped to fifth in the league after the heavy loss and has won just one of its last five games in all competitions in a slump that coincides with an injury to star forward Erling Haaland.
It’s Dortmund’s second straight consecutive Bundesliga game without a win after last weekend’s 2-1 loss at home to Cologne, which had been previously winless.
Bayern is two points ahead of Leipzig, which moved to second after beating Arminia Bielefeld 2-1.
Dortmund said Monday that Moukoko was added to the squad for the home match against Belgian club Brugge.
Moukoko, a day after turning 16, came on for Erling Haaland for the final five minutes of die Schwarzgelben's 5-2 victory at the Olympiastadion.
The Bayern Munich coach marked 12 months in charge on Wednesday with a vibrant 6-2 win over Salzburg in the Champions League.
It had been an uninspiring game from the visitors, the first of seven matches in 21 days, including Tuesday’s Champions League opener at Lazio and next week’s Ruhr derby against Schalke.
Dortmund fought back from 2-0 down to level the score, before Kimmich and the two goalkeepers made the difference.
Borussia Dortmund will focus on building and supporting HFC on its academy structure as well as guiding the Indian club on coach education.
Dortmund chief executive Hans-Joachim Watzke blamed the results purely on the pandemic, which ended a decade of of financial profits for the club between 2011-19.
Borussia Dortmund's sporting director Michael Zorc said on Monday that Dortmund had already given Sancho a pay rise “to match the development of his performances” last summer.
In May, the 35-year-old extended his contract with Borussia to June 2021.
Borrusia Dortmund have released forward Andre Schurrle with one year left in his contract.
The last time Bayern were denied the trophy was during Jurgen Klopp's reign when he steered Dortmund to consecutive title wins in 2011 and 2012.
German side Borussia Dortmund have extended their contract by a year with sporting director Michael Zorc.
Sancho has been subject to intense transfer speculations in recent times with clubs in England and Spain reportedly interested.
Dortmund duo Jadon Sancho and Manuel Akanji have been fined by German Football League (DFL) for breaking stringent health guidelines to get haircuts at home.
Borussia Dortmund youngster Jadon Sancho paid tribute to George Floyd as the side completed a 6-1 rout of Paderborn in the Bundesliga.
Bayern Munich have taken a big step towards retaining the Bundesliga title as they beat arch-rivals Borussia Dortmund 1-0 on Tuesday.
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